IL_9D7S_086

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

9D7S|1|1A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_086 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.3513

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9D7S|1|1A|C|2129
9D7S|1|1A|U|2130
9D7S|1|1A|G|2131
9D7S|1|1A|U|2132
9D7S|1|1A|G|2133
9D7S|1|1A|A|2134
9D7S|1|1A|A|2135
9D7S|1|1A|C|2136
*
9D7S|1|1A|G|2155
9D7S|1|1A|G|2156
9D7S|1|1A|G|2157
9D7S|1|1A|A|2158
9D7S|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains