IL_9D7S_221

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

9D7S|1|2A|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7S_221 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3895

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9D7S|1|2A|G|1319
9D7S|1|2A|C|1320
9D7S|1|2A|A|1321
9D7S|1|2A|A|1322
9D7S|1|2A|U|1323
9D7S|1|2A|G|1324
*
9D7S|1|2A|C|1330
9D7S|1|2A|A|1331
9D7S|1|2A|G|1332
9D7S|1|2A|C|1333

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2X

50S ribosomal protein L23