IL_9D7T_284

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAUGGUAC*GGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D7T_284 not in the Motif Atlas

Homologous match to IL_9DFE_114

Geometric discrepancy: 0.0816

The information below is about IL_9DFE_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9D7T|1|2B|C|71
9D7T|1|2B|G|72
9D7T|1|2B|A|73
9D7T|1|2B|U|74
9D7T|1|2B|G|75
9D7T|1|2B|G|76
9D7T|1|2B|U|77
9D7T|1|2B|A|78
9D7T|1|2B|C|79
*
9D7T|1|2B|G|98
9D7T|1|2B|G|99
9D7T|1|2B|A|100
9D7T|1|2B|G|101
9D7T|1|2B|A|102
9D7T|1|2B|G|103
9D7T|1|2B|U|104
9D7T|1|2B|A|105
9D7T|1|2B|G|106

Current chains

Chain 2B

5S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25