IL_9D89_016

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9D89|1|D|G|803, 9D89|1|D|G|807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0526

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9D89|1|D|G|676
9D89|1|D|A|677
9D89|1|D|A|678
9D89|1|D|A|679
9D89|1|D|C|680
*
9D89|1|D|G|801
9D89|1|D|A|802
9D89|1|D|G|803
9D89|1|D|A|804
9D89|1|D|U|805
9D89|1|D|A|806
9D89|1|D|G|807
9D89|1|D|C|808

Current chains

Chain D

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L4

Chain I

50S ribosomal protein L15