IL_9D89_019

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_019 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0658

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9D89|1|D|U|705
9D89|1|D|G|706
9D89|1|D|A|707
9D89|1|D|A|708
9D89|1|D|G|709
*
9D89|1|D|U|726
9D89|1|D|G|727
9D89|1|D|G|728
9D89|1|D|A|729
9D89|1|D|G|730

Current chains

Chain D

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L2