IL_9D89_021

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9D89|1|D|G|778, 9D89|1|D|A|790, 9D89|1|D|A|791, 9D89|1|D|U|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_021 not in the Motif Atlas

Geometric match to IL_8VTW_022

Geometric discrepancy: 0.0873

The information below is about IL_8VTW_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9D89|1|D|G|777
9D89|1|D|G|778
9D89|1|D|G|779
*
9D89|1|D|C|789
9D89|1|D|A|790
9D89|1|D|A|791
9D89|1|D|U|792
9D89|1|D|C|793

Current chains

Chain D

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain F

50S ribosomal protein L2

Chain T

Rumicidin-2 (12-27)

Chain r

50S ribosomal protein L22