IL_9D89_027

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_027 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.0472

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9D89|1|D|G|858
9D89|1|D|G|859
9D89|1|D|G|860
9D89|1|D|G|861
9D89|1|D|U|862
9D89|1|D|A|863
9D89|1|D|G|864
*
9D89|1|D|C|917
9D89|1|D|G|918
9D89|1|D|A|919
9D89|1|D|A|920
9D89|1|D|U|921
9D89|1|D|A|922
9D89|1|D|C|923

Current chains

Chain D

23S rRNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L27

Chain l

50S ribosomal protein L16

Chain u

Large ribosomal subunit protein bL25

Chain y

50S ribosomal protein L30