IL_9D89_033

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_033 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.0418

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

9D89|1|D|U|1006
9D89|1|D|C|1007
9D89|1|D|C|1008
9D89|1|D|C|1009
9D89|1|D|A|1010
9D89|1|D|A|1011
9D89|1|D|A|1012
9D89|1|D|G|1013
*
9D89|1|D|C|1152
9D89|1|D|A|1153

Current chains

Chain D

23S rRNA

Nearby chains

Chain i

Large ribosomal subunit protein uL13

Chain p

Large ribosomal subunit protein bL20