IL_9D89_038
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_038 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.1455
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
9D89|1|D|G|1040
9D89|1|D|A|1041
9D89|1|D|A|1042
9D89|1|D|G|1043
*
9D89|1|D|C|1116
9D89|1|D|G|1117
9D89|1|D|G|1118
9D89|1|D|C|1119
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L36
- Chain g
- Large ribosomal subunit protein uL6
- Chain l
- 50S ribosomal protein L16
- Chain u
- Large ribosomal subunit protein bL25
Coloring options: