IL_9D89_039

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9D89|1|D|G|1250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_039 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.0717

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

9D89|1|D|C|1198
9D89|1|D|G|1199
9D89|1|D|U|1200
*
9D89|1|D|A|1249
9D89|1|D|G|1250
9D89|1|D|U|1251
9D89|1|D|G|1252

Current chains

Chain D

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain p

Large ribosomal subunit protein bL20