IL_9D89_041

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9D89|1|D|U|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_041 not in the Motif Atlas

Homologous match to IL_9DFE_046

Geometric discrepancy: 0.2804

The information below is about IL_9DFE_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9D89|1|D|C|1210
9D89|1|D|U|1211
9D89|1|D|G|1212
9D89|1|D|U|1213
9D89|1|D|G|1214
9D89|1|D|A|1215
9D89|1|D|A|1216
9D89|1|D|G|1217
*
9D89|1|D|U|1236
9D89|1|D|G|1237
9D89|1|D|G|1238
9D89|1|D|A|1239
9D89|1|D|G|1240

Current chains

Chain D

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20