IL_9D89_045
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CUAAG*CGAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_045 not in the Motif Atlas
- Homologous match to IL_5J7L_292
- Geometric discrepancy: 0.0439
- The information below is about IL_5J7L_292
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- UAA/GAN
- Motif group
- IL_89021.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9D89|1|D|C|1353
9D89|1|D|U|1354
9D89|1|D|A|1355
9D89|1|D|A|1356
9D89|1|D|G|1357
*
9D89|1|D|C|1378
9D89|1|D|G|1379
9D89|1|D|A|1380
9D89|1|D|U|1381
9D89|1|D|G|1382
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain F
- 50S ribosomal protein L2
Coloring options: