IL_9D89_050

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9D89|1|D|U|1556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_050 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.065

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9D89|1|D|C|1439
9D89|1|D|U|1440
9D89|1|D|A|1441
9D89|1|D|U|1442
*
9D89|1|D|A|1553
9D89|1|D|A|1554
9D89|1|D|A|1555
9D89|1|D|U|1556
9D89|1|D|G|1557

Current chains

Chain D

23S rRNA

Nearby chains