IL_9D89_052

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

9D89|1|D|U|1525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_052 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.2355

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9D89|1|D|U|1470
9D89|1|D|A|1471
9D89|1|D|A|1472
9D89|1|D|G|1473
*
9D89|1|D|U|1522
9D89|1|D|G|1523
9D89|1|D|A|1524
9D89|1|D|U|1525
9D89|1|D|G|1526

Current chains

Chain D

23S rRNA

Nearby chains