IL_9D89_060
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_060 not in the Motif Atlas
- Geometric match to IL_5J7L_386
- Geometric discrepancy: 0.0252
- The information below is about IL_5J7L_386
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22854.4
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 7
Unit IDs
9D89|1|D|G|1668
9D89|1|D|G|1669
9D89|1|D|A|1670
9D89|1|D|A|1671
9D89|1|D|C|1672
9D89|1|D|U|1673
9D89|1|D|A|1674
9D89|1|D|G|1675
9D89|1|D|G|1676
*
9D89|1|D|C|1994
9D89|1|D|U|1995
9D89|1|D|G|1996
9D89|1|D|U|1997
9D89|1|D|C|1998
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L14
Coloring options: