IL_9D89_064

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_064 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1291

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9D89|1|D|U|1722
9D89|1|D|G|1723
9D89|1|D|A|1724
9D89|1|D|G|1725
9D89|1|D|G|1726
*
9D89|1|D|U|1738
9D89|1|D|G|1739
9D89|1|D|G|1740
9D89|1|D|A|1741
9D89|1|D|G|1742

Current chains

Chain D

23S rRNA

Nearby chains