IL_9D89_070

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_070 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0811

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9D89|1|D|U|1853
9D89|1|D|U|1854
9D89|1|D|A|1855
9D89|1|D|A|1856
9D89|1|D|U|1857
9D89|1|D|U|1858
9D89|1|D|G|1859
9D89|1|D|A|1860
9D89|1|D|U|1861
9D89|1|D|G|1862
*
9D89|1|D|U|1886
9D89|1|D|U|1887
9D89|1|D|G|1888
9D89|1|D|A|1889
9D89|1|D|U|1890
9D89|1|D|C|1891
9D89|1|D|G|1892
9D89|1|D|A|1893
9D89|1|D|A|1894
9D89|1|D|G|1895

Current chains

Chain D

23S rRNA

Nearby chains