IL_9D89_081

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_081 not in the Motif Atlas

Geometric match to IL_5J7L_332

Geometric discrepancy: 0.1158

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9D89|1|D|A|2301
9D89|1|D|A|2302
9D89|1|D|U|2303
*
9D89|1|D|A|2321
9D89|1|D|G|2322
9D89|1|D|G|2323
9D89|1|D|U|2324
9D89|1|D|U|2325

Current chains

Chain D

23S rRNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L27

Chain f

50S ribosomal protein L5