IL_9D89_090

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9D89|1|D|G|2580, 9D89|1|D|A|2581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_090 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0493

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9D89|1|D|C|2514
9D89|1|D|U|2515
9D89|1|D|C|2516
*
9D89|1|D|G|2578
9D89|1|D|C|2579
9D89|1|D|G|2580
9D89|1|D|A|2581
9D89|1|D|G|2582

Current chains

Chain D

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L3

Chain M

50S ribosomal protein L32

Chain T

Rumicidin-2 (12-27)