IL_9D89_092

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

9D89|1|D|A|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9D89_092 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.0611

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

9D89|1|D|U|2526
9D89|1|D|G|2527
*
9D89|1|D|C|2544
9D89|1|D|A|2545
9D89|1|D|A|2546
9D89|1|D|G|2547

Current chains

Chain D

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L36

Chain i

Large ribosomal subunit protein uL13