3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9D89_095 not in the Motif Atlas
Homologous match to IL_5J7L_346
Geometric discrepancy: 0.055
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

9D89|1|D|C|2656
9D89|1|D|U|2657
9D89|1|D|A|2658
9D89|1|D|G|2659
9D89|1|D|U|2660
9D89|1|D|A|2661
9D89|1|D|C|2662
*
9D89|1|D|G|2667
9D89|1|D|G|2668
9D89|1|D|A|2669
9D89|1|D|C|2670
9D89|1|D|C|2671
9D89|1|D|G|2672

Current chains

Chain D
23S rRNA

Nearby chains

Chain g
Large ribosomal subunit protein uL6

Coloring options:


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