IL_9D89_099
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 9D89|1|D|A|2769
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9D89_099 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.0564
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9D89|1|D|G|2741
9D89|1|D|A|2742
9D89|1|D|U|2743
9D89|1|D|A|2744
9D89|1|D|A|2745
9D89|1|D|G|2746
*
9D89|1|D|C|2766
9D89|1|D|G|2767
9D89|1|D|A|2768
9D89|1|D|A|2769
9D89|1|D|A|2770
9D89|1|D|C|2771
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L36
- Chain g
- Large ribosomal subunit protein uL6
- Chain i
- Large ribosomal subunit protein uL13
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