IL_9DFC_113
3D structure
- PDB id
- 9DFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DFC_113 not in the Motif Atlas
- Homologous match to IL_9DFE_114
- Geometric discrepancy: 0.054
- The information below is about IL_9DFE_114
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9DFC|1|1B|C|71
9DFC|1|1B|G|72
9DFC|1|1B|A|73
9DFC|1|1B|U|74
9DFC|1|1B|G|75
9DFC|1|1B|G|76
9DFC|1|1B|U|77
9DFC|1|1B|A|78
9DFC|1|1B|C|79
*
9DFC|1|1B|G|98
9DFC|1|1B|G|99
9DFC|1|1B|A|100
9DFC|1|1B|G|101
9DFC|1|1B|A|102
9DFC|1|1B|G|103
9DFC|1|1B|U|104
9DFC|1|1B|A|105
9DFC|1|1B|G|106
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
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