IL_9DFC_256

3D structure

PDB id

9DFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

9DFC|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFC_256 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4359

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9DFC|1|2A|C|2129
9DFC|1|2A|U|2130
9DFC|1|2A|G|2131
9DFC|1|2A|U|2132
9DFC|1|2A|G|2133
9DFC|1|2A|A|2134
9DFC|1|2A|A|2135
9DFC|1|2A|C|2136
*
9DFC|1|2A|G|2155
9DFC|1|2A|G|2156
9DFC|1|2A|G|2157
9DFC|1|2A|A|2158
9DFC|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains