IL_9DFE_159

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

9DFE|1|1a|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFE_159 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2073

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

9DFE|1|1a|G|1124
9DFE|1|1a|U|1125
9DFE|1|1a|U|1126
9DFE|1|1a|G|1127
*
9DFE|1|1a|C|1145
9DFE|1|1a|A|1146
9DFE|1|1a|C|1147
9DFE|1|1a|U|1148
9DFE|1|1a|C|1149

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1i

30S ribosomal protein S9

Chain 1j

30S ribosomal protein S10