IL_9DFE_177

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

9DFE|1|2A|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFE_177 not in the Motif Atlas

Homologous match to IL_9DFE_004

Geometric discrepancy: 0.0867

The information below is about IL_9DFE_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

11

Unit IDs

9DFE|1|2A|G|81
9DFE|1|2A|G|82
9DFE|1|2A|G|83
9DFE|1|2A|A|84
9DFE|1|2A|G|85
*
9DFE|1|2A|C|97
9DFE|1|2A|G|98
9DFE|1|2A|U|99
9DFE|1|2A|G|100
9DFE|1|2A|G|102
9DFE|1|2A|A|103
9DFE|1|2A|U|104
9DFE|1|2A|C|105

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L29

Chain 2Y

50S ribosomal protein L24