IL_9DFE_349

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DFE_349 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.2839

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9DFE|1|2A|G|2124
9DFE|1|2A|G|2125
9DFE|1|2A|A|2126
9DFE|1|2A|G|2127
*
9DFE|1|2A|C|2161
9DFE|1|2A|G|2162
9DFE|1|2A|C|2163
9DFE|1|2A|C|2164
9DFE|1|2A|G|2165
9DFE|1|2A|G|2166
9DFE|1|2A|U|2167
9DFE|1|2A|G|2168
9DFE|1|2A|A|2169
9DFE|1|2A|A|2170
9DFE|1|2A|A|2171
9DFE|1|2A|U|2172
9DFE|1|2A|A|2173
9DFE|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains