IL_9DOV_016
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DOV|1|A1|G|404
9DOV|1|A1|U|405
9DOV|1|A1|G|406
9DOV|1|A1|A|407
9DOV|1|A1|A|408
9DOV|1|A1|A|409
9DOV|1|A1|U|410
*
9DOV|1|A4|A|13
9DOV|1|A4|C|14
9DOV|1|A4|G|15
9DOV|1|A4|G|16
9DOV|1|A4|A|17
9DOV|1|A4|U|18
9DOV|1|A4|C|19
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AP
- 60S ribosomal protein L17-A
- Chain Ae
- Large ribosomal subunit protein eL32
Coloring options: