IL_9DOV_040
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_040 not in the Motif Atlas
- Homologous match to IL_9PN5_037
- Geometric discrepancy: 0.0529
- The information below is about IL_9PN5_037
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.4
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9DOV|1|A1|G|991
9DOV|1|A1|A|992
9DOV|1|A1|G|993
9DOV|1|A1|G|994
9DOV|1|A1|U|995
9DOV|1|A1|A|996
9DOV|1|A1|A|997
*
9DOV|1|A1|U|1052
9DOV|1|A1|A|1053
9DOV|1|A1|A|1054
9DOV|1|A1|A|1055
9DOV|1|A1|U|1056
9DOV|1|A1|A|1057
9DOV|1|A1|U|1058
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- Large ribosomal subunit protein uL18
- Chain AF
- 60S ribosomal protein L7-A
- Chain AI
- Large ribosomal subunit protein uL16
- Chain AT
- 60S ribosomal protein L21-A
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