IL_9DOV_042
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9DOV|1|A1|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_042 not in the Motif Atlas
- Homologous match to IL_9PN5_039
- Geometric discrepancy: 0.0637
- The information below is about IL_9PN5_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.4
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9DOV|1|A1|G|999
9DOV|1|A1|C|1000
9DOV|1|A1|G|1001
9DOV|1|A1|A|1002
9DOV|1|A1|A|1003
9DOV|1|A1|U|1004
*
9DOV|1|A1|A|1046
9DOV|1|A1|A|1047
9DOV|1|A1|A|1048
9DOV|1|A1|C|1049
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- Large ribosomal subunit protein uL18
- Chain AI
- Large ribosomal subunit protein uL16
- Chain AT
- 60S ribosomal protein L21-A
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