IL_9DOV_050
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_050 not in the Motif Atlas
- Homologous match to IL_9PN5_047
- Geometric discrepancy: 0.0581
- The information below is about IL_9PN5_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46868.2
- Basepair signature
- cWW-L-cWW-L-L-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
9DOV|1|A1|U|1173
9DOV|1|A1|G|1174
9DOV|1|A1|C|1175
9DOV|1|A1|C|1176
9DOV|1|A1|G|1177
9DOV|1|A1|G|1178
9DOV|1|A1|A|1179
9DOV|1|A1|A|1180
*
9DOV|1|A1|U|1325
9DOV|1|A1|A|1326
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L7-A
- Chain AO
- 60S ribosomal protein L16-A
- Chain AS
- 60S ribosomal protein L20
- Chain Af
- 60S ribosomal protein L33-A
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