IL_9DOV_055
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 9DOV|1|A1|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_055 not in the Motif Atlas
- Homologous match to IL_8GLP_082
- Geometric discrepancy: 0.4189
- The information below is about IL_8GLP_082
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.4
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 5
Unit IDs
9DOV|1|A1|U|1218
9DOV|1|A1|C|1219
9DOV|1|A1|U|1220
9DOV|1|A1|A|1221
9DOV|1|A1|G|1222
9DOV|1|A1|A|1223
9DOV|1|A1|C|1224
9DOV|1|A1|A|1225
9DOV|1|A1|G|1226
*
9DOV|1|A1|C|1283
9DOV|1|A1|C|1284
9DOV|1|A1|G|1285
9DOV|1|A1|A|1286
9DOV|1|A1|A|1287
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AH
- 60S ribosomal protein L9-A
- Chain AS
- 60S ribosomal protein L20
- Chain Am
- Ubiquitin-60S ribosomal protein L40
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