IL_9DOV_068

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

AUUCUUC*GGAAUAGUU

Length

16 nucleotides

Bulged bases

9DOV|1|A1|U|1629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|A|1625
9DOV|1|A1|U|1626
9DOV|1|A1|U|1627
9DOV|1|A1|C|1628
9DOV|1|A1|U|1629
9DOV|1|A1|U|1630
9DOV|1|A1|C|1631
*
9DOV|1|A1|G|1811
9DOV|1|A1|G|1812
9DOV|1|A1|A|1813
9DOV|1|A1|A|1814
9DOV|1|A1|U|1815
9DOV|1|A1|A|1816
9DOV|1|A1|G|1817
9DOV|1|A1|U|1818
9DOV|1|A1|U|1819

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AZ

60S ribosomal protein L27-A