IL_9DOV_090

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

9DOV|1|A1|A2M|2281, 9DOV|1|A1|C|2287, 9DOV|1|A1|C|2306

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|C|2277
9DOV|1|A1|5MC|2278
9DOV|1|A1|A|2279
9DOV|1|A1|A2M|2280
9DOV|1|A1|A2M|2281
9DOV|1|A1|U|2282
9DOV|1|A1|G|2283
9DOV|1|A1|C|2284
9DOV|1|A1|C|2285
9DOV|1|A1|U|2286
9DOV|1|A1|C|2287
9DOV|1|A1|OMG|2288
*
9DOV|1|A1|C|2304
9DOV|1|A1|G|2305
9DOV|1|A1|C|2306
9DOV|1|A1|G|2307

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA