IL_9DOV_106

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_106 not in the Motif Atlas

Homologous match to IL_9H3G_117

Geometric discrepancy: 0.1741

The information below is about IL_9H3G_117

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9DOV|1|A1|G|2824
9DOV|1|A1|C|2825
9DOV|1|A1|U|2826
*
9DOV|1|A1|G|2863
9DOV|1|A1|A|2864
9DOV|1|A1|U|2865

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

Large ribosomal subunit protein uL16

Chain Ab

Large ribosomal subunit protein eL29