IL_9DOV_118

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

9DOV|1|A1|A|3142, 9DOV|1|A1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_118 not in the Motif Atlas

Homologous match to IL_9PN5_110

Geometric discrepancy: 0.0512

The information below is about IL_9PN5_110

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.5

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

50

Unit IDs

9DOV|1|A1|C|3004
9DOV|1|A1|A|3005
9DOV|1|A1|A|3006
9DOV|1|A1|U|3007
*
9DOV|1|A1|A|3139
9DOV|1|A1|G|3140
9DOV|1|A1|A|3141
9DOV|1|A1|A|3142
9DOV|1|A1|C|3143
9DOV|1|A1|G|3144

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A