IL_9DOV_123

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

9DOV|1|A1|U|3056, 9DOV|1|A1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|U|3054
9DOV|1|A1|U|3055
9DOV|1|A1|U|3056
9DOV|1|A1|U|3057
9DOV|1|A1|U|3058
9DOV|1|A1|G|3059
*
9DOV|1|A1|C|3084
9DOV|1|A1|G|3085
9DOV|1|A1|A|3086
9DOV|1|A1|A|3087
9DOV|1|A1|G|3088

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

Large ribosomal subunit protein eL24A

Chain Ad

60S ribosomal protein L31-A