IL_9DOV_125
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- AUUAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- 9DOV|1|A1|A|3130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_125 not in the Motif Atlas
- Homologous match to IL_9PN5_116
- Geometric discrepancy: 0.0533
- The information below is about IL_9PN5_116
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.4
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
9DOV|1|A1|A|3103
9DOV|1|A1|U|3104
9DOV|1|A1|U|3105
9DOV|1|A1|A|3106
9DOV|1|A1|U|3107
*
9DOV|1|A1|A|3127
9DOV|1|A1|G|3128
9DOV|1|A1|A|3129
9DOV|1|A1|A|3130
9DOV|1|A1|U|3131
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AH
- 60S ribosomal protein L9-A
- Chain AO
- 60S ribosomal protein L16-A
- Chain Am
- Ubiquitin-60S ribosomal protein L40
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