IL_9DOV_133

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_133 not in the Motif Atlas

Homologous match to IL_9PN5_124

Geometric discrepancy: 0.1669

The information below is about IL_9PN5_124

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9DOV|1|A1|C|3235
9DOV|1|A1|U|3236
9DOV|1|A1|U|3237
9DOV|1|A1|G|3238
*
9DOV|1|A1|C|3249
9DOV|1|A1|U|3250
9DOV|1|A1|U|3251
9DOV|1|A1|G|3252

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AO

60S ribosomal protein L16-A