IL_9DOV_138

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

9DOV|1|A1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_138 not in the Motif Atlas

Homologous match to IL_9PN5_129

Geometric discrepancy: 0.0498

The information below is about IL_9PN5_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.4

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

10

Unit IDs

9DOV|1|A1|U|3332
9DOV|1|A1|G|3333
9DOV|1|A1|U|3334
9DOV|1|A1|A|3335
9DOV|1|A1|A|3336
9DOV|1|A1|G|3337
*
9DOV|1|A1|C|3367
9DOV|1|A1|U|3368
9DOV|1|A1|G|3369
9DOV|1|A1|A|3370
9DOV|1|A1|G|3371

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

Large ribosomal subunit protein eL24A

Chain Ad

60S ribosomal protein L31-A