IL_9DOV_143

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GAAAGCA*UUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_143 not in the Motif Atlas

Geometric match to IL_8QYX_166

Geometric discrepancy: 0.095

The information below is about IL_8QYX_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41504.2

Basepair signature

cWW-L-cSW-L-cSW-L-cSH-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9DOV|1|A3|G|21
9DOV|1|A3|A|22
9DOV|1|A3|A|23
9DOV|1|A3|A|24
9DOV|1|A3|G|25
9DOV|1|A3|C|26
9DOV|1|A3|A|27
*
9DOV|1|A3|U|53
9DOV|1|A3|U|54
9DOV|1|A3|A|55
9DOV|1|A3|A|56
9DOV|1|A3|G|57
9DOV|1|A3|C|58

Current chains

Chain A3

5S rRNA

Nearby chains

Chain AD

Large ribosomal subunit protein uL18

Chain AJ

Large ribosomal subunit protein uL5A