IL_9DOV_168

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

9DOV|1|B5|U|313, 9DOV|1|B5|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|U|311
9DOV|1|B5|A|312
9DOV|1|B5|U|313
9DOV|1|B5|C|314
9DOV|1|B5|A|315
9DOV|1|B5|A|316
*
9DOV|1|B5|U|348
9DOV|1|B5|U|349
9DOV|1|B5|U|350
9DOV|1|B5|C|351
9DOV|1|B5|A|352
9DOV|1|B5|A|353
9DOV|1|B5|C|354
9DOV|1|B5|G|355

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A

Chain BL

40S ribosomal protein S11-A

Chain BX

40S ribosomal protein S23-A