IL_9DOV_168
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UAUCAA*UUUCAACG
- Length
- 14 nucleotides
- Bulged bases
- 9DOV|1|B5|U|313, 9DOV|1|B5|C|351
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_168 not in the Motif Atlas
- Homologous match to IL_9PN5_159
- Geometric discrepancy: 0.06
- The information below is about IL_9PN5_159
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9DOV|1|B5|U|311
9DOV|1|B5|A|312
9DOV|1|B5|U|313
9DOV|1|B5|C|314
9DOV|1|B5|A|315
9DOV|1|B5|A|316
*
9DOV|1|B5|U|348
9DOV|1|B5|U|349
9DOV|1|B5|U|350
9DOV|1|B5|C|351
9DOV|1|B5|A|352
9DOV|1|B5|A|353
9DOV|1|B5|C|354
9DOV|1|B5|G|355
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BI
- 40S ribosomal protein S8-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BX
- 40S ribosomal protein S23-A
Coloring options: