IL_9DOV_183
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- (OMG)UGCCAG*CGG(OMU)AAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9DOV|1|B5|A|579, 9DOV|1|B5|U|581, 9DOV|1|B5|U|582
- QA status
- Modified nucleotides: OMG, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_183 not in the Motif Atlas
- Homologous match to IL_9PN5_173
- Geometric discrepancy: 0.127
- The information below is about IL_9PN5_173
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9DOV|1|B5|OMG|562
9DOV|1|B5|U|563
9DOV|1|B5|G|564
9DOV|1|B5|C|565
9DOV|1|B5|C|566
9DOV|1|B5|A|567
9DOV|1|B5|G|568
*
9DOV|1|B5|C|575
9DOV|1|B5|G|576
9DOV|1|B5|G|577
9DOV|1|B5|OMU|578
9DOV|1|B5|A|579
9DOV|1|B5|A|580
9DOV|1|B5|U|581
9DOV|1|B5|U|582
9DOV|1|B5|C|583
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- Small ribosomal subunit protein uS3
- Chain BX
- 40S ribosomal protein S23-A
- Chain Be
- 40S ribosomal protein S30-A
- Chain EC
- TSV IRES RNA
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