IL_9DOV_186

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|C|627
9DOV|1|B5|G|628
9DOV|1|B5|U|629
9DOV|1|B5|A|630
9DOV|1|B5|G|631
*
9DOV|1|B5|U|968
9DOV|1|B5|C|969
9DOV|1|B5|A|970
9DOV|1|B5|A|971
9DOV|1|B5|G|972

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BL

40S ribosomal protein S11-A

Chain BN

40S ribosomal protein S13

Chain BW

Small ribosomal subunit protein uS8A

Chain BX

40S ribosomal protein S23-A