IL_9DOV_187

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_187 not in the Motif Atlas

Homologous match to IL_9PN5_177

Geometric discrepancy: 0.2739

The information below is about IL_9PN5_177

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9DOV|1|B5|C|646
9DOV|1|B5|G|647
9DOV|1|B5|G|648
*
9DOV|1|B5|C|686
9DOV|1|B5|G|687
9DOV|1|B5|G|688

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BW

Small ribosomal subunit protein uS8A