IL_9DOV_197

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

9DOV|1|B5|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|U|893
9DOV|1|B5|U|894
9DOV|1|B5|G|895
9DOV|1|B5|U|896
9DOV|1|B5|C|897
9DOV|1|B5|A|898
9DOV|1|B5|G|899
*
9DOV|1|B5|C|910
9DOV|1|B5|U|911
9DOV|1|B5|U|912
9DOV|1|B5|G|913
9DOV|1|B5|G|914
9DOV|1|B5|A|915
9DOV|1|B5|U|916
9DOV|1|B5|U|917
9DOV|1|B5|U|918
9DOV|1|B5|A|919

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BB

Small ribosomal subunit protein eS1A

Chain BO

40S ribosomal protein S14-A