IL_9DOV_198
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_198 not in the Motif Atlas
- Homologous match to IL_9PN5_189
- Geometric discrepancy: 0.0577
- The information below is about IL_9PN5_189
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31690.2
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
9DOV|1|B5|G|985
9DOV|1|B5|G|986
9DOV|1|B5|G|987
9DOV|1|B5|A|988
9DOV|1|B5|U|989
9DOV|1|B5|C|990
*
9DOV|1|B5|G|1014
9DOV|1|B5|U|1015
9DOV|1|B5|C|1016
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- 60S ribosomal protein L2-A
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- Small ribosomal subunit protein eS26B
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