IL_9DOV_201

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGAU*GCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|G|1041
9DOV|1|B5|G|1042
9DOV|1|B5|A|1043
9DOV|1|B5|U|1044
*
9DOV|1|B5|G|1074
9DOV|1|B5|C|1075
9DOV|1|B5|A|1076
9DOV|1|B5|C|1077

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

40S ribosomal protein S0-A

Chain BB

Small ribosomal subunit protein eS1A

Chain BN

40S ribosomal protein S13

Chain Ba

Small ribosomal subunit protein eS26B