IL_9DOV_214
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9DOV|1|B5|C|1274, 9DOV|1|B5|U|1432, 9DOV|1|B5|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DOV_214 not in the Motif Atlas
- Homologous match to IL_9SUM_203
- Geometric discrepancy: 0.098
- The information below is about IL_9SUM_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DOV|1|B5|U|1272
9DOV|1|B5|G|1273
9DOV|1|B5|C|1274
9DOV|1|B5|A|1275
9DOV|1|B5|U|1276
9DOV|1|B5|G|1277
9DOV|1|B5|G|1278
*
9DOV|1|B5|U|1430
9DOV|1|B5|C|1431
9DOV|1|B5|U|1432
9DOV|1|B5|G|1433
9DOV|1|B5|U|1434
9DOV|1|B5|G|1435
9DOV|1|B5|A|1436
9DOV|1|B5|U|1437
9DOV|1|B5|G|1438
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- Small ribosomal subunit protein uS3
- Chain BK
- 40S ribosomal protein S10-A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
- Chain EC
- TSV IRES RNA
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