IL_9DOV_219

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

9DOV|1|B5|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DOV_219 not in the Motif Atlas

Homologous match to IL_9PN5_212

Geometric discrepancy: 0.1892

The information below is about IL_9PN5_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9DOV|1|B5|C|1339
9DOV|1|B5|U|1340
9DOV|1|B5|A|1341
9DOV|1|B5|C|1342
*
9DOV|1|B5|G|1383
9DOV|1|B5|A|1384
9DOV|1|B5|G|1385

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BQ

40S ribosomal protein S16-A

Chain BR

40S ribosomal protein S17-A

Chain BU

Small ribosomal subunit protein uS10

Chain Bg

Guanine nucleotide-binding protein subunit beta-like protein